The Phantom Agony era (2002-2005)
- Adyta (The Neverending Embrace)
- Cry for the Moon (The Embrace That Smothers, Part IV)
- Façade of Reality (The Embrace That Smothers, Part V)
- Falsches Spiel (Run for a Fall German Version)
- Feint
- Illusive Consensus
- Linger
- Memory
- Run for a Fall
- Seif al Din (The Embrace That Smothers, Part VI)
- Sensorium
- The Phantom Agony
- Triumph of Defeat
- Veniality
Consign to Oblivion era (2005-2007)
- Angel of Death
- Another Me (In Lack’ech)
- Beyond the Depth
- Blank Infinity
- Caught in a Web
- Consign to Oblivion (A New Age Dawns, Part III)
- Crystal Mountain
- Dance of Fate
- Empty Gaze
- Epitome
- Force of the Shore
- Hunab K’u (A New Age Dawns, Prologue)
- Inevitable Embrace
- Insomnia
- Mother of Light (A New Age Dawns, Part II)
- Mystica
- Palladium
- Purushayita
- Quietus (Silent Reverie)
- Solitary Ground
- Supremacy
- The Alleged Paradigm
- The Fallacy
- The Last Crusade (A New Age Dawns, Part I)
- The Ultimate Return
- The Valley
- Trois Vierges
- Under the Aegis
- Unholy Trinity
- Valley of Sins
- Vengeance Is Mine
The Divine Conspiracy era (2007-2009)
- Adagio
- Battle of the Heroes & Imperial March / The Imperial March
- Beyond Belief
- Chasing the Dragon
- Death of a Dream (The Embrace That Smothers, Part VII)
- Dies Irae
- Fools of Damnation (The Embrace That Smothers, Part IX)
- Higher High
- Indigo (Prologue)
- In the Hall of the Mountain King
- La’petach Chatat Rovetz (The Final Embrace)
- Living a Lie (The Embrace That Smothers, Part VIII)
- Menace of Vanity
- Montagues and Capulets
- Never Enough
- Ombra Mai Fù
- Pirates of the Caribbean Medley
- Presto
- Replica
- Safeguard to Paradise
- Sancta Terra
- Spider-Man Medley
- Stabat Mater Dolorósa
- The Divine Conspiracy
- The Obsessive Devotion
Design Your Universe era (2009-2012)
- Burn to a Cinder
- Deconstruct
- Design Your Universe (A New Age Dawns, Part VI)
- Incentive
- Kingdom of Heaven (A New Age Dawns, Part V)
- Martyr of the Free Word
- Nothing’s Wrong
- Our Destiny
- Resign to Surrender (A New Age Dawns, Part IV)
- Samadhi (Prelude)
- Semblance of Liberty
- The Price of Freedom (Interlude)
- This Is the Time
- Tides of Time
- Unleashed
- White Waters
Requiem for the Indifferent era (2012-2013)
- Anima (Interlude)
- Avalanche
- Deep Water Horizon
- Delirium
- Deter the Tyrant
- Guilty Demeanor
- Internal Warfare
- Introspect
- Karma (Prelude)
- Monopoly on Truth
- Nostalgia
- Orchestral Medley
- Outrospect
- Retrospect
- Requiem for the Indifferent
- Serenade of Self-Destruction
- Stay the Course
- Storm the Sorrow
- Twin Flames
The Quantum Enigma era (2014-2016)
- Banish Your Illusion
- Canvas of Life
- Chemical Insomnia
- Dreamscape
- In All Conscience
- Memento
- Mirage of Verity
- Natural Corruption
- Omen (The Ghoulish Malady)
- Originem
- Reverence (Living in the Heart)
- Sense Without Sanity (The Impervious Code)
- The Essence of Silence
- The Fifth Guardian (Interlude)
- The Quantum Enigma (Kingdom of Heaven, Part II)
- The Second Stone
- Unchain Utopia
- Victims of Contingency
The Holographic Principle era (2016-2019)
- A Phantasmic Parade
- Architect of Light
- Ascension (Dream State Armageddon)
- Beyond the Matrix
- Crimson Bow and Arrow
- Dancing in a Hurricane
- Decoded Poetry
- Dedicate Your Heart !
- Divide and Conquer
- Edge of the Blade
- Eidola
- Fight Your Demons
- If Inside These Walls Was a House
- Immortal Melancholy
- Once Upon a Nightmare
- Tear Down Your Walls
- The Cosmic Algorithm
- The Holographic Principle (A Profound Understanding of Reality)
- The Solace System
- Universal Death Squad
- Wheel of Destiny
- Wings of Freedom
Ωmega era (2020-present)
- Abyss of Time (Countdown to Singularity)
- Alpha (Anteludium)
- Code of Life
- Freedom (The Wolves Within)
- Gaia
- Omega (Sovereign of the Sun Spheres)
- Rivers
- Seal of Solomon
- Synergize (Manic Manifest)
- The Antediluvian Universe (Kingdom of Heaven, Part III)
- The Skeleton Key
- Twilight Reverie (The Hypnagogic State)
